Publications 2007

Abuskhuna, S., M. McCann, J. Briody, M. Devereux, K. Kavanagh, N. Kayal, V.McKee

‘Synthesis and structure of metal complexes containing zwitterionic N-hydroxyimidazole ligands’ Polyhedron, 26(15), pp 4573-4580 (2007)

 

Butler, M.P., J.A. Hanly and P.N. Moynagh

‘Kinase-active Interleukin-1 Receptor-associated Kinases Promote Polyubiquitination and Degradation of the Pellino Family:  DIRECT EVIDENCE FOR PELLINO PROTEINS BEING UBIQUITIN-PROTEIN ISOPEPTIDE LIGASES’ Journal of Biological Chemistry, 282, pp 29729-29737 (2007)

 

Carberry, S. and S. Doyle (2007)

‘Proteomic studies in biomedically and industrially relevant fungi’ Cytotechnology, 53, pp 95-100 (2007)

 

Corcoran, A., S. Kerr, M. Koppelman and S. Doyle

‘Improved detection of acute parvovirus B19 infection by IgM EIA in combination with a novel antigen EIA’ Vox Sanguinis, 93, pp 216-222 (2007)

 

Creaven, B.A., D. Egan D.  Karcz, K. Kavanagh, M. McCann, M. Mahon,  A. Noble, B. Thati and M. Walsh

‘Synthesis, characterisation and antimicrobial activity of copper(II) and manganese(II) complexes of coumarin-6,7-dioxyacetic acid (cdoaH2) and 4-methylcoumarin-6,7-dioxyacetic acid (4-MecdoaH2): X-ray crystal structures of [Cu(cdoa)(phen)2] · 8.8H2O and [Cu(4-Mecdoa)(phen)2] · 13H2O (phen = 1,10-phenanthroline)

Journal of Inorganic Biochemistry 101, 1108-1119 (2007)

 

Cumiskey, D., M.P. Butler, P.N. Moynagh and J.J. O'Connor

‘Evidence for a role for the group I metabotropic glutamate receptor in the inhibitory effect of tumor necrosis factor-alpha on long-term potentiation’ Brain Research, 1136, pp 13-19 (2007)

 

Dillon, A., M.J. Downes, D. Ward and C.T. Griffin

‘Optimizing application of entomopathogenic nematodes to manage  large pine weevil, Hylobius abietis L (Coleoptera: Curculionidae) populations developing in pine stumps Pinus sylvestris’ Biological Control 40, pp 253-263 (2007)

 

Donoghue, P., P. Doran, K. Wynne, K. Pedersen, M.J. Dunn and K. Ohlendieck

‘Proteomic profiling of chronic low-frequency stimulated fast muscle’ Proteomics, 7(18), pp 3417-3430 (2007)

 

Doran, P., P. Donoghue, K. O'Connell, J. Gannon and K. Ohlendieck

‘Proteomic profiling of pathological and aged skeletal muscle fibres by peptide mass fingerprinting’ International Journal of Molecular Medicine, 19(4), pp 547-564 (2007)

 

Doran, P., J. Gannon, K. O’Connell and K. Ohlendieck

‘Proteomic profiling of animal models mimicking skeletal muscle disorders’

Proteomics Clinical Applications, 1(9), pp 1169-1184 (2007)

 

Doran, P., J. Gannon, K. O’Connell and K. Ohlendieck

‘Aging skeletal muscle shows a drastic increase in the small heat shock proteins alphaB-crystallin/HspB5 and cvHsp/HspB7’ European Journal of Cell Biology, 86(10), pp 629-640 (2007)

 

Duarte, A.M., C.J. Wolfs, N.A. van Nuland, M.A. Harrison, J.B. Findlay, C.P. van Mierlo and M.A. Hemminga

‘Structure and localization of an essential transmembrane segment of the proton translocation channel of yeast H+-VATPase’ Biochimica et Biophysica Acta -Biomembranes 1768, pp 218-227 (2007)

 

English, K. F.P. Barry, C. Field-Corbett and B.P. Mahon

‘IFN-g and TNF-a differentially regulate immunomodulation by murine mesenchymal stem cells’ Immunology Letters, 110, pp 91-100 (2007)

 

Field-Corbett, C. and S. O’Dea

‘Soluble signals from mechanically disrupted lung tissue induce lung-related gene expression in bone marrow-derived cells in vitro’ Stem Cells and Development, 16, pp 231-242 (2007)

 

Guirnalda, P, N.B. Murphy, D. Nolan and S.J. Black

‘Cape buffalo serum anti-Trypanosoma brucei activity during the cryptic phase of parasitemia is mediated by antibodies’ International Journal of Parasitology, 37, 1391-1399 (2007)

 

Harris, S.R., D. Pisani, D. Gower and M. Wilkinson

‘Investigating stagnation in morphological phylogenetics: an approach using consensus data’ Systematic Biology, 56, pp 125-129 (2007)

 

Kavanagh, K.

Editor

New Insights in Medical Mycology. Springer, Dordrecht, (ISBN978-1-4020-6396-1), 289 pp (2007)

 

Keane, T.M., M. Goode, T.J. Naughton and J.O. McInerney

‘MultiPhyl: a high-throughput phylogenetics supercomputer’ Nucleic Acids Research, 35, pp W33-W37 (2007)

 

Kenna, T., M. O'Brien, A.E. Hogan, M.A. Exley, S.A. Porcelli, J.E. Hegarty, C. O'Farrelly and D.G. Doherty

‘CD1 expression and CD1-restricted T cell activity in normal and tumour-bearing human liver’ Cancer Immunology Immunotherapy, 56, 563-572 (2007)

 

Lacey, N., S. Delaney, K. Kavanagh and F.C. Powell

‘Mite related antigens stimulate inflammatory cells in rosacea’  British Journal of Dermatology, 157, 474-481 (2007)

 

Lian, H.Y., H. Zhang, Z.R. Zhang, H.M. Loovers, G.W. Jones, P.J.E. Rowling, L.S. Itzhaki, J.M. Zhou and S. Perrett

‘Hsp40 interacts directly with the native C-terminal region of the yeast prion protein Ure2 and inhibits formation of amyloid-like fibrils’ Journal of Biological Chemistry, 282(16), 11931-40 (2007)

 

Loader, S.P., D. Pisani, J.A. Cotton, D.J. Gower, J.J. Day and M. Wilkinson

‘Relative time scales reveal multiple origins of parallel disjunct distributions of African caecilian amphibians’ Biology Letters of the Royal Society of London, 3, pp 505-508 (2007)

 

Loovers, H.M., E. Guinan and G.W. Jones

‘Importance of Hsp70 ATPase domain in prion propagation’ Genetics, 175(2), 621- 630 (2007)

 

Masterson, J.C. and S. O’Dea

‘5-Bromo-2-deoxyuridine activates DNA damage signaling responses and induces a senescence-like phenotype in p16-null lung cancer cells’ Anti-Cancer Drugs, 18, 1053-1068 (2007)

 

‘Posttranslational truncation of E-cadherin and significance for tumour progression’ Cells Tissues Organs, 185 (1-3), 175-179 (2007)

 

McCarthy, C. and S. Doyle

‘Diagnostic Method’ Irish Patent Application, S2007/0801, (November 2007)

 

McInerney, J.O. and D. Pisani

‘Paradigm for Life’  Science, 318, pp 1390-1391 (2007)

 

Miggin, S.M., E. Palsson-McDermott, A. Dunne, C. Jefferies, E. Pinteaux, K. Banahan, C. Murphy, P.N. Moynagh, M. Yamamoto, S. Akira, N. Rothwell, D.  Golenbock, K.A. Fitzgerald and L.A. O'Neill

‘NF-κB activation by the Toll-IL-1 receptor domain protein MyD88 adapter-like is regulated by caspase-1’ Proceedings of National Academy of Sciences, USA, 104, pp 3372-3377 (2007)

 

O’Connell, K., J. Gannon, P. Doran and K. Ohlendieck

‘Proteomic profiling reveals a severely perturbed protein expression pattern in aged skeletal muscle’ International Journal of Molecular Medicine, 20(2), 145-145 (2007)

 

O’Connell, M.J. and J.O. McInerney

‘Reconstructing the ancestral eukaryote: Lessons from the past’ 

in Ancestral Sequence Reconstruction,  edited by David Liberles, Oxford University Press, pp 103-116 (2007)

 

O’Farrelly, C. and D.G. Doherty

‘Innate immune mechanisms in the liver’

in Liver Immunology: Principles and Practices, 2nd edition, edited by M. E. Gershwin, J.M. Vierling and M.P. Manns, Humana Press, pp 15-24 (2007)

 

‘A short primer of fundamental immunology’

In Liver Immunology: Principles and Practices, 2nd edition, edited by M.E. Gershwin, J.M. Vierling and M.P. Manns, Humana Press, pp 41-48 (2007)

 

O’Sullivan, N.C., P.A. McGettigan, G.K. Sheridan, M. Pickering, L. Conboy, J.J. O'Connor, P.N. Moynagh, D.G. Higgins, C.M. Regan and K.J. Murphy

‘Temporal change in gene expression in the rat dentate gyrus following passive avoidance learning’ Journal of Neurochemistry, 101, pp 1085-1098 (2007)

 

Petti, C., C. Meade, M. Downes and E. Mullins

‘Facilitating co-existence by tracking gene-dispersal in conventional potato systems with microsatellite markers’ Environmental Biosafety Research 18, pp 1-13 (2007)

 

Pisani, D., J.A. Cotton and J.O. McInerney

‘Supertrees Disentangle The Chimerical Origin Of Eukaryotic Genomes’ Molecular Biology and Evolution, 24(8), pp 1752-1760 (2007)

 

Pisani, D., M. Wilkinson and M.J. Benton

‘Congruence of molecular and morphological phylogenies: pathways to the tree of life’ Acta Biotheoretica, 55, pp 269-281 (2007)

 

Puigbò, P., S. Garcia-Vallvé and J.O. McInerney

‘TOPD/FMTS: a new software program to compare phylogenetic trees’ Bioinformatics, 23(12), pp 1556-1558 (2007)

 

Renwick, J. and K. Kavanagh

‘Insects as models for studying the virulence of fungal pathogens of humans’

in New Insights in Medical Mycology. edited by K. Kavanagh, Springer, Dordrecht, (ISBN978-1-4020-6396-1), pp 45-67 (2007)

 

Renwick, J., E.P. Reeves, F.B. Wientjes and Kavanagh, K.

‘Translocation of proteins homologous to human neutrophil p47phox and p67phox to the cell membrane in activated hemocytes of Galleria mellonella’ Developmental and Comparative Immunology, 31, pp 347-359 (2007)

 

Ruta, M., D. Pisani, G.T. Lloyd and M.J. Benton

‘A supertree of Temnospondyli (Amphibia):  analysis of diversification rates in the most species-rich group of early tetrapods’ Proceedings of the Royal Society B, 274, pp 3087-3095 (2007)

 

Ryan, J.M., F.P. Barry, J.M. Murphy and B.P. Mahon

‘IFN-g does not break but promotes the immunosuppressive capacity of adult human mesenchymal stem cells’

Clinical and Experimental Immunology, 149, pp 353-363 (2007)

 

Schreiber, D. and K. Ohlendieck

‘Oligomerisation of sarcoplasmic reticulum Calcium-ATPase monomers from skeletal muscle’ Protein and Peptide Letters, 14(3), pp 219-226 (2007)

 

Sheridan, G.K., M. Pickering, C. Twomey, P.N. Moynagh, J.J. O’Connor and K.J. Murphy

‘NF-κB activity in distinct neural subtypes of the rat hippocampus:  Influence of time and GABA antagonism in acute slice preparations’ Learning and Memory, 14, pp 525-532 (2007)

 

Sperling, E.A., D. Pisani and K.J. Peterson

‘Poriferan paraphyly and its implications for Precambrian palaeobiology’ Geological Society of London Special Publications, 286, pp 355-367 (2007)

 

Stack, D., C.M. Neville and S. Doyle

‘Nonribosomal peptide synthesis in the human pathogen Aspergillus fumigatus and other fungi’ Microbiology, 153, pp 297-1306 (2007)

 

Thati, B., A. Noble, B.S. Creaven, M. Walsh, K. Kavanagh, D.A. Egan

‘An in vitro investigation of the induction of  apoptosis and modulation of cell cycle events in human cancer cells  by bisphenanthroline-coumarin-6,7-dioxacetatocopper(II) complex’ Chemico-Biological Interactions, 168, pp 143-158 (2007)

 

Thati, B, A. Noble, B.S. Creaven, M. Walsh, M. McCann, K. Kavanagh, M. Devereux and D. Egan

‘In vitro anti-tumour and cyto-selective effects of coumarin-3-carboxylic acid and three of its hydroxylated derivatives, along with their silver-based complexes, using human epithelial carcinoma cell lines’ Cancer Letters, 248, pp 321-331 (2007)

 

Thati, B., A. Noble, B.S. Creaven, K. Kavanagh, M. McCann, M. Devereux and D. Egan

‘A study of the role of apoptotic cell death and cell cycle events mediating the mechanism of action of 6-hydroxycoumarin-3-carboxylatosilver in human malignant hepatic cells’ Cancer Letters, 250, pp 128-139 (2007)

 

Thati, B., A. Noble, R. Rowan, B.S. Creaven, M. Walsh M. McCann, D. Egan and K. Kavanagh

‘Mechanism of action of coumarin and silver(I)-coumarin complexes against the pathogenic yeast Candida albicans’ Toxicology in Vitro, 21, pp 801-808 (2007)

 

Tyson, T., W. Reardon, J.A. Browne and A.M. Burnell

‘Gene induction by desiccation stress in the entomopathogenic nematode Steinernema carpocapsae reveals parallels with drought tolerance mechanisms in plants’  International Journal of  Parasitology, 37, pp 763–776 (2007)

 

Vickers, I., E.P. Reeves, K. Kavanagh and S. Doyle

‘Isolation, activity and immunological characterisation of a secreted aspartic protease, CtsD, from Aspergillus fumigatus’ Protein Expression and Purification, 53, pp 216-224 (2007)

 

Wilkinson, M., J.A. Cotton, F.J. Lapointe and D. Pisani

‘On some consensus properties of some supertree methods’ Systematic Biology, 56, pp 330-337 (2007)

 

Wilkinson, M., J.O. McInerney, R.P. Hirt, P.G. Foster and T.M. Embley

‘Of clades and clans: terms for phylogenetic relationships in unrooted trees’ Trends in Ecology and Evolution, 22(3), pp 114-115 (2007)

Last edited: Monday, 03-Nov-2008 14:38:52 GMT

Biology Department , NUI Maynooth
Tel: +353-1-708 3843 | Fax: +353-1-708 3845| Email: terry.roche@nuim.ie